recently, graph neural networks (GNNs) have shown success at learning representations of brain graphs derived from functional magnetic resonance imaging (fMRI) data. the majority of existing GNN methods, however, assume brain graphs are static over time and the graph adjacency matrix is known prior to model training. these assumptions are at odds with neuroscientific evidence that brain graphs are time-varying with a connectivity structure that depends on the choice of functional connectivity measure. noisy brain graphs that do not truly represent the underling fMRI data can have a detrimental impact on the performance of GNNs. as a solution, we propose dynamic brain graph structure Learning (DBGSL), a novel method for learning the optimal time-varying dependency structure of fMRI data induced by a downstream prediction task. experiments demonstrate DBGSL achieves state-of-the-art performance for sex classification using real-world resting-state and task fMRI data. moreover, analysis of the learnt dynamic graphs highlights prediction-related brain regions which align with existing neuroscience literature. code available at https://github.com/ajrcampbell/dynamic-brain-graph-structure-learning.

Campbell, A., Zippo, A.g., Passamonti, L., Toschi, N., Lio, P. (2023). DBGSL: Dynamic Brain Graph Structure Learning. In MEDICAL IMAGING WITH DEEP LEARNING (pp.1318-1345). ML Research Press.

DBGSL: Dynamic Brain Graph Structure Learning

Toschi N.;
2023-01-01

Abstract

recently, graph neural networks (GNNs) have shown success at learning representations of brain graphs derived from functional magnetic resonance imaging (fMRI) data. the majority of existing GNN methods, however, assume brain graphs are static over time and the graph adjacency matrix is known prior to model training. these assumptions are at odds with neuroscientific evidence that brain graphs are time-varying with a connectivity structure that depends on the choice of functional connectivity measure. noisy brain graphs that do not truly represent the underling fMRI data can have a detrimental impact on the performance of GNNs. as a solution, we propose dynamic brain graph structure Learning (DBGSL), a novel method for learning the optimal time-varying dependency structure of fMRI data induced by a downstream prediction task. experiments demonstrate DBGSL achieves state-of-the-art performance for sex classification using real-world resting-state and task fMRI data. moreover, analysis of the learnt dynamic graphs highlights prediction-related brain regions which align with existing neuroscience literature. code available at https://github.com/ajrcampbell/dynamic-brain-graph-structure-learning.
6th International Conference on Medical Imaging with Deep Learning (MIDL)
Nashville, TN (USA)
2023
6.
Rilevanza internazionale
contributo
2023
Settore PHYS-06/A - Fisica per le scienze della vita, l'ambiente e i beni culturali
English
Dynamic graph
functional magnetic resonance imaging
graph neural network
This work is supported by The Alan Turing Institute under the EPSRC grant EP/N510129/1. Data were provided [in part] by the Human Connectome Project, WU-Minn Consortium (Principal Investigators: David Van Essen and Kamil Ugurbil; 1U54MH091657) funded by the 16 NIH Institutes and Centers that support the NIH Blueprint for Neuroscience Research; and by the McDonnell Center for Systems Neuroscience at Washington University
Intervento a convegno
Campbell, A., Zippo, A.g., Passamonti, L., Toschi, N., Lio, P. (2023). DBGSL: Dynamic Brain Graph Structure Learning. In MEDICAL IMAGING WITH DEEP LEARNING (pp.1318-1345). ML Research Press.
Campbell, A; Zippo, Ag; Passamonti, L; Toschi, N; Lio, P
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/2108/404343
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