while deep learning methods have been successfully applied to tackle a wide variety of prediction problems, their application has been mostly limited to data structured in a grid-like fashion. however, the study of the human brain "connectome" involves the representation of the brain as a graph with interacting nodes. In this paper, we extend the graph attention network (GAT), a novel neural network (NN) architecture acting on the features of the nodes of a binary graph, to handle a set of graphs provided with node features and non-binary edge weights. we demonstrate the effectiveness of our architecture by training it multimodal data collected from a large homogeneous fMRI dataset (n=1003 individuals with multiple fMRI sessions per subject) made publicly available by the human connectome project (HCP), demonstrating good performance and seamless integration of multimodal neuroimaging data. our adaptation provides a powerful and flexible deep learning tool to integrate multimodal neuroimaging connectomics data in a predictive context.
Filip, A., Azevedo, T., Passamonti, L., Toschi, N., Lio, P. (2020). A novel Graph Attention Network Architecture for modeling multimodal brain connectivity. In Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS (pp.1071-1074). IEEE [10.1109/EMBC44109.2020.9176613].
A novel Graph Attention Network Architecture for modeling multimodal brain connectivity
Toschi, N;
2020-01-01
Abstract
while deep learning methods have been successfully applied to tackle a wide variety of prediction problems, their application has been mostly limited to data structured in a grid-like fashion. however, the study of the human brain "connectome" involves the representation of the brain as a graph with interacting nodes. In this paper, we extend the graph attention network (GAT), a novel neural network (NN) architecture acting on the features of the nodes of a binary graph, to handle a set of graphs provided with node features and non-binary edge weights. we demonstrate the effectiveness of our architecture by training it multimodal data collected from a large homogeneous fMRI dataset (n=1003 individuals with multiple fMRI sessions per subject) made publicly available by the human connectome project (HCP), demonstrating good performance and seamless integration of multimodal neuroimaging data. our adaptation provides a powerful and flexible deep learning tool to integrate multimodal neuroimaging connectomics data in a predictive context.File | Dimensione | Formato | |
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