We present a multiscale computational protocol for the simulation of a wide range of spectroscopic properties─electronic, magnetic, and vibrational─of zwitterionic l-tryptophan in aqueous solution. The approach combines density functional theory (DFT) for the solute with polarizable embedding models (QM/FQ and QM/FQFμ) for the solvent, and incorporates extensive conformational sampling via classical molecular dynamics. The protocol successfully reproduces UV–vis and ECD spectra, including the characteristic S0→ S1transition and chiroptical features, and captures the negative optical rotation at the sodium D-line with good agreement to experiment. NMR chemical shifts and spin–spin couplings are also computed, and a hybrid QM/FDE/FQFμ scheme is employed to improve the description of solvent-sensitive nuclei. Vibrational spectra (IR, Raman, and ROA) are calculated and analyzed, with all models yielding results consistent with experimental data where available. The comparison between QM/FQ and QM/FQFμ highlights the importance of accurate solvent treatment, especially for chiroptical and magnetic properties.
Trinari, M., Sepali, C., Giovannini, T., Cappelli, C. (2025). Fully Atomistic Modeling in Computational Spectroscopy: Tryptophan in Aqueous Solution as a Test Case. JOURNAL OF PHYSICAL CHEMISTRY. A, MOLECULES, SPECTROSCOPY, KINETICS, ENVIRONMENT, & GENERAL THEORY, 129(45), 10323-10338 [10.1021/acs.jpca.5c04511].
Fully Atomistic Modeling in Computational Spectroscopy: Tryptophan in Aqueous Solution as a Test Case
Giovannini, Tommaso;
2025-01-01
Abstract
We present a multiscale computational protocol for the simulation of a wide range of spectroscopic properties─electronic, magnetic, and vibrational─of zwitterionic l-tryptophan in aqueous solution. The approach combines density functional theory (DFT) for the solute with polarizable embedding models (QM/FQ and QM/FQFμ) for the solvent, and incorporates extensive conformational sampling via classical molecular dynamics. The protocol successfully reproduces UV–vis and ECD spectra, including the characteristic S0→ S1transition and chiroptical features, and captures the negative optical rotation at the sodium D-line with good agreement to experiment. NMR chemical shifts and spin–spin couplings are also computed, and a hybrid QM/FDE/FQFμ scheme is employed to improve the description of solvent-sensitive nuclei. Vibrational spectra (IR, Raman, and ROA) are calculated and analyzed, with all models yielding results consistent with experimental data where available. The comparison between QM/FQ and QM/FQFμ highlights the importance of accurate solvent treatment, especially for chiroptical and magnetic properties.| File | Dimensione | Formato | |
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