Introduction: We propose a novel approach for the non-invasive quantification of dynamic PET imaging data, focusing on the arterial input function (AIF) without the need for invasive arterial cannulation. Methods: Our method utilizes a combination of three-dimensional depth-wise separable convolutional layers and a physically informed deep neural network to incorporatea priori knowledge about the AIF's functional form and shape, enabling precise predictions of the concentrations of [11C]PBR28 in whole blood and the free tracer in metabolite-corrected plasma. Results: We found a robust linear correlation between our model's predicted AIF curves and those obtained through traditional, invasive measurements. We achieved an average cross-validated Pearson correlation of 0.86 for whole blood and 0.89 for parent plasma curves. Moreover, our method's ability to estimate the volumes of distribution across several key brain regions – without significant differences between the use of predicted versus actual AIFs in a two-tissue compartmental model – successfully captures the intrinsic variability related to sex, the binding affinity of the translocator protein (18 kDa), and age. Conclusions: These results not only validate our method's accuracy and reliability but also establish a foundation for a streamlined, non-invasive approach to dynamic PET data quantification. By offering a precise and less invasive alternative to traditional quantification methods, our technique holds significant promise for expanding the applicability of PET imaging across a wider range of tracers, thereby enhancing its utility in both clinical research and diagnostic settings.

Ferrante, M., Inglese, M., Brusaferri, L., Whitehead, A., Maccioni, L., Turkheimer, F., et al. (2024). Physically informed deep neural networks for metabolite-corrected plasma input function estimation in dynamic PET imaging. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 256 [10.1016/j.cmpb.2024.108375].

Physically informed deep neural networks for metabolite-corrected plasma input function estimation in dynamic PET imaging

Ferrante, M;Inglese, M;Toschi, N
2024-01-01

Abstract

Introduction: We propose a novel approach for the non-invasive quantification of dynamic PET imaging data, focusing on the arterial input function (AIF) without the need for invasive arterial cannulation. Methods: Our method utilizes a combination of three-dimensional depth-wise separable convolutional layers and a physically informed deep neural network to incorporatea priori knowledge about the AIF's functional form and shape, enabling precise predictions of the concentrations of [11C]PBR28 in whole blood and the free tracer in metabolite-corrected plasma. Results: We found a robust linear correlation between our model's predicted AIF curves and those obtained through traditional, invasive measurements. We achieved an average cross-validated Pearson correlation of 0.86 for whole blood and 0.89 for parent plasma curves. Moreover, our method's ability to estimate the volumes of distribution across several key brain regions – without significant differences between the use of predicted versus actual AIFs in a two-tissue compartmental model – successfully captures the intrinsic variability related to sex, the binding affinity of the translocator protein (18 kDa), and age. Conclusions: These results not only validate our method's accuracy and reliability but also establish a foundation for a streamlined, non-invasive approach to dynamic PET data quantification. By offering a precise and less invasive alternative to traditional quantification methods, our technique holds significant promise for expanding the applicability of PET imaging across a wider range of tracers, thereby enhancing its utility in both clinical research and diagnostic settings.
2024
Pubblicato
Rilevanza internazionale
Articolo
Esperti anonimi
Settore PHYS-06/A - Fisica per le scienze della vita, l'ambiente e i beni culturali
English
TSPO; physics informed neural networks; PET; metabolic imaging; IDIF; AIF
This work is supported and funded by: NEXTGENERATIONEU (NGEU); the Ministry of University and Research (MUR); the National Recovery and Resilience Plan (NRRP); project MNESYS (PE0000006, to NT) - A Multiscale integrated approach to the study of the nervous system in health and disease (DN. 1553 11.10.2022); the MURPNRR M4C2I1.3 PE6 project PE00000019 Heal Italia (to NT); the NATIONAL CENTRE FOR HPC, BIG DATA AND QUANTUM COMPUTING, within the spoke ‘‘Multiscale Modeling and Engineering Applications’’ (to NT); the European Innovation Council (Project CROSSBRAIN - Grant Agreement 101070908, Project BRAINSTORM - Grant Agreement 101099355); the Horizon 2020 research and innovation Programme (Project EXPERIENCE - Grant Agreement 101017727). Matteo Ferrante is a Ph.D. student enrolled in the National PhD in Artificial Intelligence, XXXVII cycle, course on Health and Life Sciences, organized by Università Campus Bio-Medico di Roma.
Ferrante, M., Inglese, M., Brusaferri, L., Whitehead, A., Maccioni, L., Turkheimer, F., et al. (2024). Physically informed deep neural networks for metabolite-corrected plasma input function estimation in dynamic PET imaging. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 256 [10.1016/j.cmpb.2024.108375].
Ferrante, M; Inglese, M; Brusaferri, L; Whitehead, A; Maccioni, L; Turkheimer, F; Nettis, M; Mondelli, V; Howes, O; Loggia, M; Veronese, M; Toschi, N...espandi
Articolo su rivista
File in questo prodotto:
File Dimensione Formato  
Ferrante-2024-Physically informed.pdf

accesso aperto

Tipologia: Versione Editoriale (PDF)
Licenza: Creative commons
Dimensione 1.51 MB
Formato Adobe PDF
1.51 MB Adobe PDF Visualizza/Apri

I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.

Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/2108/403466
Citazioni
  • ???jsp.display-item.citation.pmc??? ND
  • Scopus 0
  • ???jsp.display-item.citation.isi??? 0
social impact