PEPE, GERARDO
PEPE, GERARDO
Dipartimento di Biologia
A feature-based meta-analysis approach to unravel the pathophysiological landscape of autoimmune diseases
2023-06-22 Pepe, G; Vallania, F; HELMER CITTERICH, M; Appierdo, R; Gherardini, Pf
A Feature-based meta-analysis approach to unravel the pathophysiological landscape of autoimmune diseases
2023-06-21 Appierdo, R; Pepe, G; Helmer-Citterich, M; Vallania, F; Gherardini, P
A Meta-Analysis Approach to Gene Regulatory Network Inference Identifies Key Regulators of Cardiovascular Diseases
2024-04-11 Pepe, G; Appierdo, R; Ausiello, G; Helmer-Citterich, M; Gherardini, Pf
Artificial intelligence methods enhance the discovery of RNA interactions
2022-01-01 Pepe, G; Appierdo, R; Carrino, C; Ballesio, F; Helmer Citterich, M; Gherardini, Pf
BRIO: a web server for RNA sequence and structure motif scan
2021-01-01 Guarracino, A; Pepe, G; Ballesio, F; Adinolfi, M; Pietrosanto, M; Sangiovanni, E; Vitale, I; Ausiello, G; Helmer-Citterich, M
Dissecting the Genome for Drug Response Prediction
2022-01-01 Pepe, G; Carrino, C; Parca, L; Helmer-Citterich, M
Evaluation of potential miRNA sponge effects of SARS genomes in human
2022-03-01 Pepe, G; Guarracino, A; Ballesio, F; Parca, L; Ausiello, G; Helmer Citterich, M
Exploring the landscape of tools and resources for the analysis of long non-coding RNAs
2023-01-01 Ballarino, M; Pepe, G; Helmer Citterich, M; Palma, A
HGG-43. Abrogation of exosome biogenesis significantly affects cell motility in heterogenous sub-populations of paediatric-type diffuse high-grade glioma
2022-06-03 HELMER CITTERICH, M; Pepe, G; Pericoli, G; Galardi, &; Lisa Petrilli, &; Paolini, &; Levi Mortera, &; Palma, &; de Billy, &; Ferretti, &; Colletti, &; Giorda, &; Burford, &; Mackay, &; Pascucci, &; Peinado, &; Jones, &; Putignani, &; Carai, &; Mastronuzzi, &; Masotti, &; Locatelli, &; Di Giannatale, &; Vinci, &
Human lncRNAs harbor conserved modules embedded in different sequence contexts
2023-11-02 Ballesio, F; Pepe, G; Ausiello, G; Novelletto, A; Helmer-Citterich, M; Gherardini, Pf
Identification of modules in human lncRNAs
2022-11-03 Pepe, G; Ballesio, F; Ausiello, G; Gherardini, Pf; HELMER CITTERICH, M
Identification of RNA modules in human lncRNAs
2022-06-27 Ballesio, F; Pepe, G; Ausiello, G; Gherardini, Pf; HELMER CITTERICH, M
Inhibition of exosome biogenesis affects cell motility in heterogeneous sub-populations of paediatric-type diffuse high-grade gliomas
2023-01-01 Pericoli, G; Galardi, A; Paolini, A; Petrilli, Ll; Pepe, G; Palma, A; Colletti, M; Ferretti, R; Giorda, E; Levi Mortera, S; Burford, A; Carai, A; Mastronuzzi, A; Mackay, A; Putignani, L; Jones, C; Pascucci, L; Peinado, H; Helmer Citterich, M; de Billy, E; Masotti, A; Locatelli, F; Di Giannatale, A; Vinci, M
Inhibition of HECT E3 ligases as potential therapy for COVID-19
2021-01-01 Novelli, G; Liu, J; Biancolella, M; Alonzi, T; Novelli, A; Patten, Jj; Cocciadiferro, D; Agolini, E; Colona, Vl; Rizzacasa, B; Giannini, R; Bigio, B; Goletti, D; Capobianchi, Mr; Grelli, S; Mann, J; Mckee, Td; Cheng, K; Amanat, F; Krammer, F; Guarracino, A; Pepe, G; Tomino, C; Tandjaoui-Lambiotte, Y; Uzunhan, Y; Tubiana, S; Ghosn, J; Notarangelo, Ld; Su, Hc; Abel, L; Cobat, A; Elhanan, G; Grzymski, Jj; Latini, A; Sidhu, Ss; Jain, S; Davey, Ra; Casanova, J-; Wei, W; Pandolfi, Pp
Investigating the possibility of a modular organization of lncRNA human genes by exon sequence and structure global alignments
2022-06-22 Ballesio, F; Pepe, G; Ausiello, G; Gherardini, Pf; HELMER CITTERICH, M
Looking for plant microRNAs in human blood samples: bioinformatics evidence and perspectives
2023-01-01 Olmi, L; Pepe, G; HELMER CITTERICH, M; Canini, A; Gismondi, A
Modeling cancer drug response through drug-specific informative genes
2019-01-01 Parca, L; Pepe, G; Pietrosanto, M; Galvan, G; Galli, L; Palmeri, A; Sciandrone, M; Ferre, F; Ausiello, G; Helmer Citterich, M
NRF2 connects Src tyrosine kinase to ferroptosis resistance in glioblastoma
2024-01-01 Cirotti, C; Taddei, I; Contadini, C; Di Girolamo, C; Pepe, G; De Bardi, M; Borsellino, G; Helmer-Citterich, M; Barila', D
PDBe-KB: collaboratively defining the biological context of structural data
2022-01-01 Varadi, M; Anyango, S; Armstrong, D; Berrisford, J; Choudhary, P; Deshpande, M; Nadzirin, N; Nair, Ss; Pravda, L; Tanweer, A; Al-Lazikani, B; Andreini, C; Barton, Gj; Bednar, D; Berka, K; Blundell, T; Brock, Kp; Carazo, Jm; Damborsky, J; David, A; Dey, S; Dunbrack, R; Recio, Jf; Fraternali, F; Gibson, T; Helmer Citterich, M; Hoksza, D; Hopf, T; Jakubec, D; Kannan, N; Krivak, R; Kumar, M; Levy, Ed; London, N; Macias, Jr; Srivatsan, Mm; Marks, Ds; Martens, L; Mcgowan, Sa; Mcgreig, Je; Modi, V; Parra, Rg; Pepe, G; Piovesan, D; Prilusky, J; Putignano, V; Radusky, Lg; Ramasamy, P; Rausch, Ao; Reuter, N; Rodriguez, La; Rollins, Nj; Rosato, A; Rubach, P; Serrano, L; Singh, G; Skoda, P; Sorzano, Cos; Stourac, J; Sulkowska, Ji; Svobodova, R; Tichshenko, N; Tosatto, Sce; Vranken, W; Wass, Mn; Xue, D; Zaidman, D; Thornton, J; Sternberg, M; Orengo, C; Velankar, S
Unveiling the signaling network of FLT3-ITD AML improves drug sensitivity prediction
2024-01-01 Latini, S; Venafra, V; Massacci, G; Bica, V; Graziosi, S; Pugliese, Gm; Iannuccelli, M; Frioni, F; Minnella, G; Marra, Jd; Chiusolo, P; Pepe, G; Helmer-Citterich, M; Mougiakakos, D; Boettcher, M; Fischer, T; Perfetto, L; Sacco, F
Data di pubblicazione | Titolo | Autore(i) | Tipo | File |
---|---|---|---|---|
22-giu-2023 | A feature-based meta-analysis approach to unravel the pathophysiological landscape of autoimmune diseases | Pepe, G; Vallania, F; HELMER CITTERICH, M; Appierdo, R; Gherardini, Pf | Intervento a convegno | |
21-giu-2023 | A Feature-based meta-analysis approach to unravel the pathophysiological landscape of autoimmune diseases | Appierdo, R; Pepe, G; Helmer-Citterich, M; Vallania, F; Gherardini, P | Intervento a convegno | |
11-apr-2024 | A Meta-Analysis Approach to Gene Regulatory Network Inference Identifies Key Regulators of Cardiovascular Diseases | Pepe, G; Appierdo, R; Ausiello, G; Helmer-Citterich, M; Gherardini, Pf | Articolo su rivista | |
1-gen-2022 | Artificial intelligence methods enhance the discovery of RNA interactions | Pepe, G; Appierdo, R; Carrino, C; Ballesio, F; Helmer Citterich, M; Gherardini, Pf | Articolo su rivista | |
1-gen-2021 | BRIO: a web server for RNA sequence and structure motif scan | Guarracino, A; Pepe, G; Ballesio, F; Adinolfi, M; Pietrosanto, M; Sangiovanni, E; Vitale, I; Ausiello, G; Helmer-Citterich, M | Articolo su rivista | |
1-gen-2022 | Dissecting the Genome for Drug Response Prediction | Pepe, G; Carrino, C; Parca, L; Helmer-Citterich, M | Contributo in libro | |
1-mar-2022 | Evaluation of potential miRNA sponge effects of SARS genomes in human | Pepe, G; Guarracino, A; Ballesio, F; Parca, L; Ausiello, G; Helmer Citterich, M | Articolo su rivista | |
1-gen-2023 | Exploring the landscape of tools and resources for the analysis of long non-coding RNAs | Ballarino, M; Pepe, G; Helmer Citterich, M; Palma, A | Articolo su rivista | |
3-giu-2022 | HGG-43. Abrogation of exosome biogenesis significantly affects cell motility in heterogenous sub-populations of paediatric-type diffuse high-grade glioma | HELMER CITTERICH, M; Pepe, G; Pericoli, G; Galardi, &; Lisa Petrilli, &; Paolini, &; Levi Mortera, &; Palma, &; de Billy, &; Ferretti, &; Colletti, &; Giorda, &; Burford, &; Mackay, &; Pascucci, &; Peinado, &; Jones, &; Putignani, &; Carai, &; Mastronuzzi, &; Masotti, &; Locatelli, &; Di Giannatale, &; Vinci, & | Intervento a convegno | |
2-nov-2023 | Human lncRNAs harbor conserved modules embedded in different sequence contexts | Ballesio, F; Pepe, G; Ausiello, G; Novelletto, A; Helmer-Citterich, M; Gherardini, Pf | Altro | |
3-nov-2022 | Identification of modules in human lncRNAs | Pepe, G; Ballesio, F; Ausiello, G; Gherardini, Pf; HELMER CITTERICH, M | Intervento a convegno | |
27-giu-2022 | Identification of RNA modules in human lncRNAs | Ballesio, F; Pepe, G; Ausiello, G; Gherardini, Pf; HELMER CITTERICH, M | Intervento a convegno | |
1-gen-2023 | Inhibition of exosome biogenesis affects cell motility in heterogeneous sub-populations of paediatric-type diffuse high-grade gliomas | Pericoli, G; Galardi, A; Paolini, A; Petrilli, Ll; Pepe, G; Palma, A; Colletti, M; Ferretti, R; Giorda, E; Levi Mortera, S; Burford, A; Carai, A; Mastronuzzi, A; Mackay, A; Putignani, L; Jones, C; Pascucci, L; Peinado, H; Helmer Citterich, M; de Billy, E; Masotti, A; Locatelli, F; Di Giannatale, A; Vinci, M | Articolo su rivista | |
1-gen-2021 | Inhibition of HECT E3 ligases as potential therapy for COVID-19 | Novelli, G; Liu, J; Biancolella, M; Alonzi, T; Novelli, A; Patten, Jj; Cocciadiferro, D; Agolini, E; Colona, Vl; Rizzacasa, B; Giannini, R; Bigio, B; Goletti, D; Capobianchi, Mr; Grelli, S; Mann, J; Mckee, Td; Cheng, K; Amanat, F; Krammer, F; Guarracino, A; Pepe, G; Tomino, C; Tandjaoui-Lambiotte, Y; Uzunhan, Y; Tubiana, S; Ghosn, J; Notarangelo, Ld; Su, Hc; Abel, L; Cobat, A; Elhanan, G; Grzymski, Jj; Latini, A; Sidhu, Ss; Jain, S; Davey, Ra; Casanova, J-; Wei, W; Pandolfi, Pp | Articolo su rivista | |
22-giu-2022 | Investigating the possibility of a modular organization of lncRNA human genes by exon sequence and structure global alignments | Ballesio, F; Pepe, G; Ausiello, G; Gherardini, Pf; HELMER CITTERICH, M | Intervento a convegno | |
1-gen-2023 | Looking for plant microRNAs in human blood samples: bioinformatics evidence and perspectives | Olmi, L; Pepe, G; HELMER CITTERICH, M; Canini, A; Gismondi, A | Articolo su rivista | |
1-gen-2019 | Modeling cancer drug response through drug-specific informative genes | Parca, L; Pepe, G; Pietrosanto, M; Galvan, G; Galli, L; Palmeri, A; Sciandrone, M; Ferre, F; Ausiello, G; Helmer Citterich, M | Articolo su rivista | |
1-gen-2024 | NRF2 connects Src tyrosine kinase to ferroptosis resistance in glioblastoma | Cirotti, C; Taddei, I; Contadini, C; Di Girolamo, C; Pepe, G; De Bardi, M; Borsellino, G; Helmer-Citterich, M; Barila', D | Articolo su rivista | |
1-gen-2022 | PDBe-KB: collaboratively defining the biological context of structural data | Varadi, M; Anyango, S; Armstrong, D; Berrisford, J; Choudhary, P; Deshpande, M; Nadzirin, N; Nair, Ss; Pravda, L; Tanweer, A; Al-Lazikani, B; Andreini, C; Barton, Gj; Bednar, D; Berka, K; Blundell, T; Brock, Kp; Carazo, Jm; Damborsky, J; David, A; Dey, S; Dunbrack, R; Recio, Jf; Fraternali, F; Gibson, T; Helmer Citterich, M; Hoksza, D; Hopf, T; Jakubec, D; Kannan, N; Krivak, R; Kumar, M; Levy, Ed; London, N; Macias, Jr; Srivatsan, Mm; Marks, Ds; Martens, L; Mcgowan, Sa; Mcgreig, Je; Modi, V; Parra, Rg; Pepe, G; Piovesan, D; Prilusky, J; Putignano, V; Radusky, Lg; Ramasamy, P; Rausch, Ao; Reuter, N; Rodriguez, La; Rollins, Nj; Rosato, A; Rubach, P; Serrano, L; Singh, G; Skoda, P; Sorzano, Cos; Stourac, J; Sulkowska, Ji; Svobodova, R; Tichshenko, N; Tosatto, Sce; Vranken, W; Wass, Mn; Xue, D; Zaidman, D; Thornton, J; Sternberg, M; Orengo, C; Velankar, S | Articolo su rivista | |
1-gen-2024 | Unveiling the signaling network of FLT3-ITD AML improves drug sensitivity prediction | Latini, S; Venafra, V; Massacci, G; Bica, V; Graziosi, S; Pugliese, Gm; Iannuccelli, M; Frioni, F; Minnella, G; Marra, Jd; Chiusolo, P; Pepe, G; Helmer-Citterich, M; Mougiakakos, D; Boettcher, M; Fischer, T; Perfetto, L; Sacco, F | Articolo su rivista |